| Pos | No. | Rider | Nat. | Team | Bike | Total points | SPA | AUS | SAF | JAP | ITA | GBR | GER | ITA | USA | |||||||||
| 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | 1 | 2 | |||||||
| 1 | 1 | Troy Bayliss | AUS | Ducati Infostrada | Ducati 998 F 02 | 405 | 25 | 25 | 25 | 25 | 25 | 25 | 11 | 13 | 25 | 25 | 11 | 25 | 25 | 25 | 25 | 25 | 25 | 20 |
| 2 | 2 | Colin Edwards | USA | Castrol Honda | Honda VTR 1000 SP2 | 352 | 13 | 16 | 20 | 20 | 20 | 16 | 25 | 20 | 16 | 20 | 25 | 20 | 20 | 20 | 20 | 20 | 16 | 25 |
| 3 | 100 | Neil Hodgson | GBR | HM Plant Ducati | Ducati 998 F 01 | 221 | 10 | 11 | 11 | 13 | 11 | 13 | 13 | 16 | 20 | 13 | 16 | 10 | 8 | 16 | 13 | 11 | 16 | |
| 4 | 155 | Ben Bostrom | USA | Ducati L & M | Ducati 998 F 02 | 184 | 16 | 13 | 13 | 11 | 13 | 11 | 9 | 9 | 7 | 9 | 8 | 11 | 13 | 11 | 11 | 8 | 11 | |
| 5 | 41 | Noriyuki Haga | JPN | Playstation2-FGF Aprilia | Aprilia RSV 1000 | 182 | 20 | 20 | 10 | 10 | 16 | 11 | 16 | 20 | 6 | 13 | 11 | 13 | 16 | |||||
| 6 | 11 | Ruben Xaus | ESP | Ducati Infostrada | Ducati 998 F 02 | 172 | 11 | 16 | 16 | 16 | 20 | 7 | 10 | 8 | 16 | 16 | 16 | 20 | ||||||
| 7 | 52 | James Toseland | GBR | HM Plant Ducati | Ducati 998 F 01 | 124 | 4 | 6 | 8 | 9 | 10 | 8 | 7 | 5 | 11 | 6 | 7 | 9 | 9 | 8 | 7 | 10 | ||
| 8 | 9 | Chris Walker | GBR | Kawasaki Racing | Kawasaki ZX-7RR | 108 | 6 | 9 | 7 | 7 | 8 | 7 | 5 | 3 | 6 | 2 | 13 | 7 | 9 | 8 | 5 | 6 | ||
| 9 | 7 | Pierfrancesco Chili | ITA | Ducati NCR Axo | Ducati 998 RS | 90 | 7 | 13 | 13 | 5 | 10 | 10 | 10 | 9 | 4 | 9 | ||||||||
| 10 | 10 | Gregorio Lavilla | ESP | Alstare Suzuki Corona | Suzuki GSX-R750 Y | 84 | 8 | 9 | 8 | 5 | 4 | 4 | 9 | 11 | 2 | 8 | 6 | 10 | ||||||
| 11 | 19 | Lucio Pedercini | ITA | Pedercini | Ducati 998 RS | 53 | 2 | 5 | 6 | 4 | 10 | 6 | 6 | 7 | 7 | |||||||||
| 12 | 33 | Juan Bautista Borja | ESP | Spaziotel Racing | Ducati 998 RS | 53 | 5 | 8 | 4 | 6 | 7 | 6 | 2 | 1 | 5 | 9 | ||||||||
| 13 | 32 | Eric Bostrom | USA | Kawasaki Racing | Kawasaki ZX-7RR | 49 | 3 | 2 | 7 | 9 | 5 | 10 | 13 | |||||||||||
| 14 | 14 | Hitoyasu Izutsu | JPN | Kawasaki Racing | Kawasaki ZX-7RR | 47 | 9 | 10 | 10 | 9 | 9 | |||||||||||||
| 15 | 99 | Steve Martin | AUS | DFX Racing Ducati Pirelli | Ducati 998 RS | 47 | 7 | 3 | 6 | 5 | 7 | 5 | 3 | 4 | 2 | 5 | ||||||||
| 16 | 42 | Makoto Tamada | JPN | Cabin Honda | Honda VTR 1000 SP2 | 45 | 20 | 25 | ||||||||||||||||
| 17 | 20 | Marco Borciani | ITA | Pedercini | Ducati 998 RS | 37 | 4 | 5 | 6 | 3 | 4 | 4 | 5 | 6 | ||||||||||
| 18 | 12 | Broc Parkes | AUS | Ducati NCR Parmalat | Ducati 998 RS | 35 | 1 | 3 | 5 | 2 | 8 | 4 | 5 | 2 | 1 | 4 | ||||||||
| 19 | 46 | Mauro Sanchini | ITA | Kawasaki Bertocchi | Kawasaki ZX-7RR | 31 | 1 | 1 | 4 | 3 | 4 | 3 | 1 | 2 | 2 | 4 | 5 | 1 | ||||||
| 20 | 30 | Alessandro Antonello | ITA | DFX Racing Ducati Pirelli | Ducati 998 RS | 24 | 3 | 2 | 5 | 8 | 3 | 3 | ||||||||||||
| 21 | 49 | Akira Yanagawa | JPN | Kawasaki Racing | Kawasaki ZX-7RR | 20 | 10 | 10 | ||||||||||||||||
| 22 | 55 | Shane Byrne | GBR | Renegade Ducati | Ducati 998 RS | 18 | 7 | 11 | ||||||||||||||||
| 23 | 120 | Aaron Yates | USA | Yoshimura Suzuki | Suzuki GSX-R750 Y | 17 | 9 | 8 | ||||||||||||||||
| 24 | 69 | Nicky Hayden | USA | American Honda | Honda RC51 | 16 | 13 | 3 | ||||||||||||||||
| 25 | 43 | Wataru Yoshikawa | JPN | YSP Racing & PRESTO | Yamaha YZF R7 | 16 | 8 | 8 | ||||||||||||||||
| 26 | 5 | Mark Heckles | GBR | Castrol Honda Rumi | Honda VTR 1000 SP2 | 13 | 2 | 1 | 10 | |||||||||||||||
| 27 | 28 | Serafino Foti | ITA | Pedercini | Ducati 996 RS | 13 | 2 | 4 | 1 | 4 | 2 | |||||||||||||
| 28 | 45 | Takeshi Tsujimura | JPN | YSP Racing & PRESTO | Yamaha YZF R7 | 12 | 6 | 6 | ||||||||||||||||
